CctwApplication Class Reference

#include <cctwapplication.h>

Inheritance diagram for CctwApplication:

Collaboration diagram for CctwApplication:

Public Slots
void	printLine (QString line)
void	printMessage (QString msg, QDateTime dt=QDateTime::currentDateTime())
void	wait (QString msg)
void	evaluateStartupCommand (QString cmd)
void	evaluateCommand (QString cmd)
void	executeScriptFile (QString path)
void	execute ()
void	executeTransform ()
void	executeMerge ()
void	executeNorm ()
void	executeProject ()
void	showHelp (QString about)
void	showVersion ()
void	setThreads (QString desc)
void	clearWriteSettings ()
void	writeSettings ()
void	readSettings ()
void	writeSettings (QString path)
void	readSettings (QString path)
QString	settingsScript ()
void	setInputData (QString data)
void	setInputChunks (QString data)
void	setInputDataset (QString data)
void	setMaskData (QString data)
void	setMaskDataset (QString data)
void	setAnglesData (QString data)
void	setAnglesDataset (QString data)
void	setOutputData (QString data)
void	setOutputDims (QString data)
void	setOutputChunks (QString data)
void	setOutputDataset (QString data)
void	setOmega (QString data)
void	setTwoTheta (QString data)
void	setChi (QString data)
void	setPhi (QString data)
void	setSubset (QString desc)
void	transform (QString desc)
void	partialDependencies (QString desc)
void	noDependencies ()
void	mergeInput (QString path)
void	mergeOutput (QString path)
void	runTransform ()
void	runMerge ()
void	runNorm ()
void	runProject ()
void	setNormalization (QString data)
void	setCompression (QString data)
void	inputProject (int axes)
void	outputProject (int axes)
void	setProjectOutput (QString dir)
void	calculateDependencies ()
void	calculateChunkDependencies (int n)
void	saveDependencies (QString path)
void	loadDependencies (QString path)
void	reportDependencies ()
void	doAboutToQuit ()
void	reportInputDependencies ()
void	reportInputDependencies (CctwIntVector3D idx)
void	reportOutputDependencies ()
void	reportOutputDependencies (CctwIntVector3D idx)
void	reportInputChunkCounts ()
void	reportOutputChunkCounts ()
void	analyzePEMetaData (QString path)
void	analyzeSpecDataFile (QString path)
CctwCrystalCoordinateParameters *	parameters () const
void	addWorkOutstanding (int amt)
void	workCompleted (int amt)
void	waitCompleted ()
int	workOutstanding ()
int	inputChunkCount ()
int	outputChunkCount ()
QcepIntList	dependencies (int chunkId)
QList< CctwIntVector3D >	dependencies (int cx, int cy, int cz)
void	testing ()

Public Member Functions
	CctwApplication (int &argc, char *argv[])
void	initialize (int &argc, char *argv[])
void	plotCurves (QwtPlotCurve *c1, QwtPlotCurve *c2, QwtPlotCurve *c3, QwtPlotCurve *c4)
QcepSettingsSaverWPtr	saver () const
QScriptValue	evaluate (QString cmd)
void	printHDF5errors ()

Static Public Member Functions
static QString	addSlashes (QString str)

Public Attributes
QcepObjectNamer	m_ObjectNamer
CctwqtMainWindow *	m_Window
CctwCrystalCoordinateParameters *	m_Parameters
CctwComparer *	m_CompareData
CctwChunkedData *	m_InputData
CctwChunkedData *	m_OutputData
CctwCrystalCoordinateTransform *	m_Transform
CctwTransformer *	m_Transformer
CctwScriptEngine *	m_ScriptEngine
CctwPEIngressCommand *	m_PEIngressCommand
QcepSettingsSaverPtr	m_Saver

Properties
bool	guiWanted
int	mode
QcepStringList	startupCommands
QcepStringList	inputFiles
QString	outputFile
QString	maskFile
QString	anglesFile
QString	weightsFile
int	debug
bool	halting
int	progress
int	progressLimit
QString	dependenciesPath
QString	settingsPath
QString	scriptPath
QString	specDataFilePath
int	mpiRank
int	mpiSize
int	verbosity
int	exitStatus

Private Slots
void	onDebugChanged (int dbg)
void	onProgress (int prg)

Private Member Functions
void	startupCommand (QString cmd)
void	preStartup ()
void	postStartup ()
void	readSettings (QSettings *settings)
void	writeSettings (QSettings *settings)
void	decodeCommandLineArgs (int &argc, char *argv[])
void	decodeCommandLineArgsForUnix (int &argc, char *argv[])
void	decodeCommandLineArgsForWindows (int &argc, char *argv[])
void	installHDF5ErrorHandler ()
void	pushInputFile (QString path)
void	autoChunkSizes ()
void	autoOutputFile (QString suffix)

Private Attributes
QAtomicInt	m_DependencyCounter
QAtomicInt	m_WorkOutstanding
QAtomicInt	m_LastProgress

Detailed Description

Definition at line 32 of file cctwapplication.h.

Constructor & Destructor Documentation

CctwApplication::CctwApplication ( int &  argc, char *  argv[]  )

explicit

Definition at line 46 of file cctwapplication.cpp.

References g_Saver, CctwDoubleVector3DProperty::registerMetaTypes(), CctwIntVector3DProperty::registerMetaTypes(), CctwDoubleMatrix3x3Property::registerMetaTypes(), and CctwUnitCellProperty::registerMetaTypes().

  : QCoreApplication(argc, argv),
#else
  : QApplication(argc, argv),
#endif
  m_ObjectNamer(this, "cctw"),
#ifndef NO_GUI
  m_Window(NULL),
#endif
  m_Parameters(NULL),
#ifdef WANT_IMPORT_COMMANDS
  m_ImportData(NULL),
#endif
  m_CompareData(NULL),
  m_InputData(NULL),
  m_OutputData(NULL),
  m_Transform(NULL),
  m_Transformer(NULL),
  m_ScriptEngine(NULL),
  m_PEIngressCommand(NULL),
#ifdef NO_GUI
  m_Saver(NULL),
#else
  m_Saver(new QcepSettingsSaver(this)),
#endif
  m_GuiWanted(QcepSettingsSaverWPtr(), this, "guiWanted", true, "Is GUI wanted?"),
  m_Mode(QcepSettingsSaverWPtr(), this, "mode", 0, "Operation mode"),
  m_StartupCommands(QcepSettingsSaverWPtr(), this, "startupCommands", QcepStringList(), "Startup commands"),
  m_InputFiles(QcepSettingsSaverWPtr(), this, "inputFiles", QcepStringList(), "Input files"),
  m_OutputFile(QcepSettingsSaverWPtr(), this, "outputFile", "", "Output file"),
  m_MaskFile(QcepSettingsSaverWPtr(), this, "maskFile", "", "Mask file"),
  m_AnglesFile(QcepSettingsSaverWPtr(), this, "anglesFile", "", "Angles File"),
  m_WeightsFile(QcepSettingsSaverWPtr(), this, "weightsFile", "", "Weights File"),
  m_Debug(m_Saver, this, "debug", 0, "Debug Level"),
  m_Halting(QcepSettingsSaverWPtr(), this, "halting", false, "Set to halt operation in progress"),
  m_Progress(QcepSettingsSaverWPtr(), this, "progress", 0, "Progress completed"),
  m_ProgressLimit(QcepSettingsSaverWPtr(), this, "progressLimit", 100, "Progress limit"),
  m_DependenciesPath(m_Saver, this, "dependenciesPath", "", "Dependencies saved in"),
  m_SettingsPath(m_Saver, this, "settingsPath", "", "Settings saved in"),
  m_ScriptPath(m_Saver, this, "scriptPath", "", "Execute script from"),
  m_SpecDataFilePath(m_Saver, this, "specDataFilePath", "", "Pathname of spec data file"),
  m_MpiRank(QcepSettingsSaverWPtr(), this, "mpiRank", 0, "MPI Rank of process"),
  m_MpiSize(QcepSettingsSaverWPtr(), this, "mpiSize", -1, "MPI Size"),
  m_Verbosity(QcepSettingsSaverWPtr(), this, "verbosity", 0, "Output Verbosity"),
  m_ExitStatus(QcepSettingsSaverWPtr(), this, "exitStatus", 0, "Exit Status")
{
  QcepProperty::registerMetaTypes();
  CctwDoubleMatrix3x3Property::registerMetaTypes();
  CctwDoubleVector3DProperty::registerMetaTypes();
  CctwIntVector3DProperty::registerMetaTypes();
  CctwUnitCellProperty::registerMetaTypes();

  g_Saver = m_Saver;

  connect(prop_Debug(), SIGNAL(valueChanged(int,int)), this, SLOT(onDebugChanged(int)));
  connect(prop_Progress(), SIGNAL(valueChanged(int,int)), this, SLOT(onProgress(int)));

  connect(this, SIGNAL(aboutToQuit()), this, SLOT(doAboutToQuit()));

  register_lzf();
}

Member Function Documentation

QString CctwApplication::addSlashes ( QString  str )

static

Definition at line 160 of file cctwapplication.cpp.

Referenced by decodeCommandLineArgsForUnix(), CctwCrystalCoordinateParameters::parseAngleArgument(), CctwObject::scriptValueLiteral(), CctwChunkedData::setAnglesSource(), CctwChunkedData::setDataSource(), CctwChunkedData::setMaskSource(), and CctwChunkedData::setWeightsSource().

{

  QString newStr;

  for(int i=0;i<str.length();i++) {
    if(str[i] == '\0') {
      newStr.append('\\');
      newStr.append('0');
    } else if(str[i] == '\'') {
      newStr.append('\\');
      newStr.append('\'');
    } else if(str[i] == '\"') {
      newStr.append('\\');
      newStr.append('\"');
    } else if(str[i] == '\\') {
      newStr.append('\\');
      newStr.append('\\');
    } else {
      newStr.append(str[i]);
    }
  }

  return newStr;
}

void CctwApplication::addWorkOutstanding ( int  amt )

slot

Definition at line 1523 of file cctwapplication.cpp.

References m_WorkOutstanding.

Referenced by calculateDependencies(), CctwImporter::importData(), CctwTransformer::simpleTransform(), and CctwTransformer::transform().

{
  m_WorkOutstanding.fetchAndAddOrdered(amt);
}

void CctwApplication::analyzePEMetaData ( QString  path )

slot

Definition at line 1556 of file cctwapplication.cpp.

References CctwPEIngressCommand::analyzePEMetaData(), and m_PEIngressCommand.

Referenced by CctwqtMainWindow::doAnalyzePEMetaData().

{
  set_SpecDataFilePath(path);

  QtConcurrent::run(m_PEIngressCommand, &CctwPEIngressCommand::analyzePEMetaData, path);
}

void CctwApplication::analyzeSpecDataFile ( QString  path )

slot

Definition at line 1563 of file cctwapplication.cpp.

References CctwPEIngressCommand::analyzeSpecDataFile(), and m_PEIngressCommand.

Referenced by CctwqtMainWindow::doAnalyzeSpecDataFile().

{
  set_SpecDataFilePath(path);

  QtConcurrent::run(m_PEIngressCommand, &CctwPEIngressCommand::analyzeSpecDataFile, path);
}

void CctwApplication::autoChunkSizes ( )

private

Definition at line 1939 of file cctwapplication.cpp.

Referenced by runMerge().

{
}

void CctwApplication::autoOutputFile ( QString  suffix )

private

Definition at line 1901 of file cctwapplication.cpp.

References printMessage().

Referenced by runMerge(), and runTransform().

{
  if (get_OutputFile().length() == 0) {
    QString commonBase = "";
    int first = true;

    foreach(QString f, get_InputFiles()) {
      QUrl u(f);
      QString fn = u.fileName();
      QFileInfo fi(fn);
      QString bn = fi.completeBaseName();

      if (first) {
        commonBase = bn;
        first = false;
      } else {
        QString a;

        for (int i=0; i<bn.length(); i++) {
          if (commonBase[i] == bn[i]) {
            a.append(bn[i]);
          } else break;
        }

        if (a.length() >= 1) {
          commonBase = a;
        }
      }

      printMessage(tr("Common basename %1").arg(commonBase));
    }

    QString res = commonBase + suffix;

    set_OutputFile(res);
  }
}

void CctwApplication::calculateChunkDependencies ( int  n )

slot

Definition at line 1155 of file cctwapplication.cpp.

References CctwTransformer::addDependency(), CctwChunkedData::chunk(), CctwChunkedData::chunkContaining(), CctwDataChunk::chunkSize(), CctwDataChunk::chunkStart(), CctwChunkedData::containsPixel(), CctwCrystalCoordinateTransform::forward(), m_DependencyCounter, m_InputData, m_OutputData, m_Parameters, m_Transformer, transform(), workCompleted(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

Referenced by calculateDependencies().

{
  if (!get_Halting()) {
    QcepDoubleVector anglesvec = m_InputData->get_Angles();
    double *angs = (anglesvec.count()<=0 ? NULL : anglesvec.data());

    CctwCrystalCoordinateTransform transform(m_Parameters, tr("transform-%1").arg(n), angs, NULL);

    //    printMessage(tr("Calculate Chunk Dependencies for chunk [%1,%2,%3]").arg(idx.x()).arg(idx.y()).arg(idx.z()));

    CctwDataChunk  *chunk   = m_InputData->chunk(n);

    if (chunk) {
      CctwIntVector3D chStart = chunk->chunkStart();
      CctwIntVector3D chSize  = chunk->chunkSize();
      CctwDoubleVector3D dblStart(chStart.x(), chStart.y(), chStart.z());
      int lastChunk = -1;

      int osx = m_Transformer->get_OversampleX();
      int osy = m_Transformer->get_OversampleY();
      int osz = m_Transformer->get_OversampleZ();

      double osxstp = osx >= 1 ? 1.0/osx : 0;
      double osystp = osy >= 1 ? 1.0/osy : 0;
      double oszstp = osz >= 1 ? 1.0/osz : 0;

      for (int z=0; z<chSize.z(); z++) {
        for (int oz=0; oz<osz; oz++) {
          for (int y=0; y<chSize.y(); y++) {
            for (int oy=0; oy<osy; oy++) {
              for (int x=0; x<chSize.x(); x++) {
                for (int ox=0; ox<osx; ox++) {
                  CctwDoubleVector3D coords = dblStart+CctwDoubleVector3D(x+ox*osxstp, y+oy*osystp, z+oz*oszstp);

                  CctwDoubleVector3D xfmcoord = transform.forward(coords);

                  CctwIntVector3D    pixels(xfmcoord);

                  if (m_OutputData->containsPixel(pixels)) {
                    int opchunk  = m_OutputData->chunkContaining(pixels);

                    if (opchunk != lastChunk) {
                      lastChunk = opchunk;
                      //              m_InputData->addDependency(n, opchunk);
                      //              m_OutputData->addDependency(opchunk, n);
                      m_Transformer->addDependency(n, opchunk);
                    }
                  }
                }
              }
            }
          }
        }
      }
    }

//    printMessage(tr("Finished Chunk Dependencies for chunk [%1,%2,%3]").arg(idx.x()).arg(idx.y()).arg(idx.z()));

    m_DependencyCounter.fetchAndAddOrdered(-1);
  } else {
    m_DependencyCounter.fetchAndStoreOrdered(0);
  }

  prop_Progress()->incValue(1);

  workCompleted(1);
}

void CctwApplication::calculateDependencies ( )

slot

Definition at line 1223 of file cctwapplication.cpp.

References addWorkOutstanding(), calculateChunkDependencies(), CctwChunkedData::chunkCount, CctwChunkedData::chunkNumberFromIndex(), CctwTransformer::clearDependencies(), m_DependencyCounter, m_InputData, m_Transformer, CctwThread::msleep(), printMessage(), CctwVector3D< T >::volume(), waitCompleted(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

Referenced by partialDependencies().

{
  QVector < QFuture < void > > futures;
  waitCompleted();

//  m_InputData->clearDependencies();
//  m_OutputData->clearDependencies();

  m_Transformer->clearDependencies(1);

  CctwIntVector3D chunks = m_InputData->chunkCount();

  set_Halting(false);
  set_Progress(0);
  set_ProgressLimit(chunks.volume());

  QTime startAt;

  startAt.start();

  printMessage("Starting calculate dependencies");

  m_DependencyCounter.fetchAndStoreOrdered(0);

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      for (int x=0; x<chunks.x(); x++) {
//        while ((!get_Halting()) && (m_DependencyCounter.fetchAndAddOrdered(0) > 32)) {
//          processEvents();
//        }

        if (get_Halting()) {
          m_DependencyCounter.fetchAndStoreOrdered(0);
          goto abort;
        } else {
          CctwIntVector3D idx(x,y,z);
          int n = m_InputData->chunkNumberFromIndex(idx);

          m_DependencyCounter.fetchAndAddOrdered(1);

          addWorkOutstanding(1);
          futures.append(
                QtConcurrent::run(this, &CctwApplication::calculateChunkDependencies, n));
//          calculateChunkDependencies(idx);
        }
      }
    }
  }

abort:
  while (m_DependencyCounter.fetchAndAddOrdered(0) > 0) {
    CctwThread::msleep(10);
    processEvents();
  }

  foreach (QFuture<void> f, futures) {
    f.waitForFinished();
    processEvents();
  }

//  m_Transformer -> completedDependencies();

  int msec = startAt.elapsed();

  printMessage(tr("finished calculate dependencies after %1 msec").arg(msec));
}

void CctwApplication::clearWriteSettings ( )

slot

Definition at line 1057 of file cctwapplication.cpp.

References printMessage(), and writeSettings().

{
  QSettings settings("xray.aps.anl.gov", "cctw");

  printMessage(tr("Writing default settings"));

  settings.clear();

  writeSettings(&settings);
}

void CctwApplication::decodeCommandLineArgs ( int &  argc, char *  argv[]  )

private

Definition at line 144 of file cctwapplication.cpp.

References decodeCommandLineArgsForUnix(), and decodeCommandLineArgsForWindows().

Referenced by initialize().

{
#ifdef Q_OS_UNIX
  decodeCommandLineArgsForUnix(argc, argv);
#endif

#ifdef Q_OS_WIN
  decodeCommandLineArgsForWindows(argc, argv);
#endif
}

void CctwApplication::decodeCommandLineArgsForUnix ( int &  argc, char *  argv[]  )

private

Definition at line 186 of file cctwapplication.cpp.

References addSlashes(), MergeMode, NormMode, printMessage(), ProjectMode, pushInputFile(), startupCommand(), and TransformMode.

Referenced by decodeCommandLineArgs().

{
#ifdef Q_OS_UNIX
  int c;

  enum {
    argInputChunks = 10,
    argVersion,
    argInputDataset,
    argOutputDims,
    argOutputChunks,
    argOutputDataset,
    argInputProject,
    argOutputProject,
    argProjectOutput,
    argMergeInput,
    argMergeOutput,
    argOmega,
    argTwoTheta,
    argPhi,
    argChi
  };

  int option_index = 0;

  while (1) {
    static struct option long_options[] = {
      {"help", no_argument, 0, 'h'},
      {"version", no_argument, 0, argVersion},
      {"verbosity", optional_argument, 0, 'v'},
      {"threads", required_argument, 0, 'j'},
      {"input", required_argument, 0, 'i'},
      {"inputchunks", required_argument, 0, argInputChunks},
      {"inputdataset", required_argument, 0, argInputDataset},
      {"mask", required_argument, 0, 'm'},
      {"angles", required_argument, 0, 'a'},
      {"omega", required_argument, 0, argOmega},
      {"twotheta", required_argument, 0, argTwoTheta},
      {"phi", required_argument, 0, argPhi},
      {"chi", required_argument, 0, argChi},
      {"weights", required_argument, 0, 'w'},
      {"output", required_argument, 0, 'o'},
      {"outputdims", required_argument, 0, argOutputDims},
      {"outputchunks", required_argument, 0, argOutputChunks},
      {"outputdataset", required_argument, 0, argOutputDataset},
      {"normalization", required_argument, 0, 'N'},
      {"compression", required_argument, 0, 'z'},
      {"subset", required_argument, 0, 'S'},
      {"transform", no_argument, 0, 't'},
      {"depends", no_argument, 0, 'd'},
      {"nodepends", no_argument, 0, 'x'},
      {"debug", required_argument, 0, 'D'},
      {"preferences", required_argument, 0, 'p'},
      {"gui", no_argument, 0, 'g'},
      {"nogui", no_argument, 0, 'n'},
      {"command", required_argument, 0, 'c'},
      {"script", required_argument, 0, 's'},
      {"iproject", optional_argument, 0, argInputProject},
      {"oproject", optional_argument, 0, argOutputProject},
      {"projectout", required_argument, 0, argProjectOutput},
      {"mergein", required_argument, 0, argMergeInput},
      {"mergeout", required_argument, 0, argMergeOutput},
      {0,0,0,0}
    };

    c = getopt_long(argc, argv, "hv::j:i:m:a:o:N:S:tdxD:p:gnc:w::s:z:", long_options, &option_index);

    if (c == -1) {
      break;
    }

    switch (c) {
    case 'h':
      startupCommand("showHelp();");
      break;

    case argVersion:
      startupCommand("showVersion();");
      break;

    case 'v':
      if (optarg) {
        set_Verbosity(atoi(optarg));
      } else {
        prop_Verbosity()->incValue(1);
      }
      break;

    case 'j':
      startupCommand(tr("setThreads(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'i':
      pushInputFile(optarg);
      break;

    case argInputChunks:
      startupCommand(tr("setInputChunks(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argInputDataset:
      startupCommand(tr("setInputDataset(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'm':
      startupCommand(tr("setMask(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'a':
      startupCommand(tr("setAngles(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argOmega:
      startupCommand(tr("setOmega(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argTwoTheta:
      startupCommand(tr("setTwoTheta(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argPhi:
      startupCommand(tr("setPhi(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argChi:
      startupCommand(tr("setChi(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'w':
      startupCommand(tr("setWeights(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'o':
      set_OutputFile(optarg);
      break;

    case 'S':
      startupCommand(tr("setSubset(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argOutputDims:
      startupCommand(tr("setOutputDims(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argOutputChunks:
      startupCommand(tr("setOutputChunks(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argOutputDataset:
      startupCommand(tr("setOutputDataset(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 't':
      startupCommand(tr("doTransform(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'd':
      startupCommand(tr("partialDependencies(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'x':
      startupCommand(tr("noDependencies();"));
      break;

    case 'N':
      startupCommand(tr("normalization(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'z':
      startupCommand(tr("compression(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argInputProject:
      startupCommand(tr("inputProject(%1);").arg(optarg?atoi(optarg):7));
      break;

    case argOutputProject:
      startupCommand(tr("outputProject(%1);").arg(optarg?atoi(optarg):7));
      break;

    case argProjectOutput:
      startupCommand(tr("setProjectOutput(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'g': /* want gui */
      set_GuiWanted(true);
      break;

    case 'n': /* no gui */
      set_GuiWanted(false);
      break;

    case 'c': /* command line command */
      startupCommand(tr("%1;").arg(optarg));
      break;

    case 's': /* script file */
      startupCommand(tr("executeScriptFile(\"%1\");").arg(addSlashes(optarg)));
      break;

    case 'p': /* preferences file */
      startupCommand(tr("loadPreferences(\"%1\");").arg(addSlashes(optarg)));
      break;

    case argMergeInput:
      pushInputFile(optarg);
      break;

    case argMergeOutput:
      set_OutputFile(optarg);
      break;

    case 'D': /* change debug level */
      {
        char *a = optarg;
        int lvl = atoi(a);
        set_Debug(lvl);
      }
      break;

    case '?': /* unknown option, or missing optional argument */
      printMessage("Unrecognized command line option");
      break;

    default:
      break;
    }
  }

  int first=true;

  while (optind < argc) {
    if (first) {
      first = false;

      if (strcasecmp(argv[optind], "transform") == 0) {
        set_Mode(TransformMode);
      } else if (strcasecmp(argv[optind], "merge") == 0) {
        set_Mode(MergeMode);
      } else if (strcasecmp(argv[optind], "norm") == 0) {
        set_Mode(NormMode);
      } else if (strcasecmp(argv[optind], "project") == 0) {
        set_Mode(ProjectMode);
      } else {
        pushInputFile(argv[optind]);
      }
    } else {
      pushInputFile(argv[optind]);
    }

    optind++;
  }
#endif
}

void CctwApplication::decodeCommandLineArgsForWindows ( int &  argc, char *  argv[]  )

private

Definition at line 441 of file cctwapplication.cpp.

Referenced by decodeCommandLineArgs().

{
}

QcepIntList CctwApplication::dependencies ( int  chunkId )

slot

Definition at line 1546 of file cctwapplication.cpp.

References CctwTransformer::dependencies(), and m_Transformer.

{
  return m_Transformer->dependencies(chunkIdx);
}

QList< CctwIntVector3D > CctwApplication::dependencies ( int  cx, int  cy, int  cz  )

slot

Definition at line 1551 of file cctwapplication.cpp.

References CctwTransformer::dependencies(), and m_Transformer.

{
  return m_Transformer->dependencies(cx, cy, cz);
}

void CctwApplication::doAboutToQuit ( )

slot

Definition at line 570 of file cctwapplication.cpp.

References writeSettings().

{
#ifndef NO_GUI
  writeSettings();
#endif
}

QScriptValue CctwApplication::evaluate

(

QString

cmd

)

Definition at line 639 of file cctwapplication.cpp.

References CctwScriptEngine::checkForExceptions(), and m_ScriptEngine.

Referenced by Cctwtcl_Cmd(), and Cctwtcl_Parameters_Cmd().

{
  if (m_ScriptEngine) {
    QScriptValue result = m_ScriptEngine->evaluate(cmd);

    m_ScriptEngine->checkForExceptions();

    return result;
  } else {
    return QScriptValue();
  }
}

void CctwApplication::evaluateCommand ( QString  cmd )

slot

Definition at line 624 of file cctwapplication.cpp.

References CctwScriptEngine::checkForExceptions(), m_ScriptEngine, and printMessage().

Referenced by CctwqtMainWindow::doProjectInput(), and CctwqtMainWindow::doProjectOutput().

{
  if (m_ScriptEngine) {
    QScriptValue val = m_ScriptEngine->evaluate(cmd);

    m_ScriptEngine->checkForExceptions();

    if (val.isUndefined()) {
      printMessage(tr("%1").arg(cmd));
    } else {
      printMessage(tr("%1 -> %2").arg(cmd).arg(val.toString()));
    }
  }
}

void CctwApplication::evaluateStartupCommand ( QString  cmd )

slot

Definition at line 611 of file cctwapplication.cpp.

References CctwScriptEngine::checkForExceptions(), m_ScriptEngine, and printMessage().

{
  if (m_ScriptEngine) {
    QScriptValue val = m_ScriptEngine->evaluate(cmd);

    m_ScriptEngine->checkForExceptions();

    if (!val.isUndefined()) {
      printMessage(tr("%1").arg(val.toString()));
    }
  }
}

void CctwApplication::execute ( )

slot

Definition at line 1847 of file cctwapplication.cpp.

References executeMerge(), executeNorm(), executeProject(), executeTransform(), MergeMode, NormMode, ProjectMode, and TransformMode.

{
  int m = get_Mode();

  switch (m) {
  case 0:
    break;

  case TransformMode:
    executeTransform();
    break;

  case MergeMode:
    executeMerge();
    break;

  case NormMode:
    executeNorm();
    break;

  case ProjectMode:
    executeProject();
    break;
  }

//  printMessage(tr("Mode : %1").arg(m));

//  foreach (QString s, get_InputFiles()) {
//    printMessage(tr("File: \"%1\"").arg(s));
//  }
}

void CctwApplication::executeMerge ( )

slot

Definition at line 1796 of file cctwapplication.cpp.

References CctwThread::msleep(), printMessage(), and runMerge().

Referenced by execute().

{
  QStringList f = get_InputFiles();

  if (f.count() < 1) {
    printMessage(tr("cctw merge needs 1 or more input files, rather than %1").arg(f.count()));
  } else {

    QFuture<void> f = QtConcurrent::run(this, &CctwApplication::runMerge);

    while (!f.isFinished()) {
      CctwThread::msleep(100);
      processEvents(QEventLoop::ExcludeUserInputEvents);
    }
  }
}

void CctwApplication::executeNorm ( )

slot

Definition at line 1813 of file cctwapplication.cpp.

References CctwThread::msleep(), printMessage(), and runNorm().

Referenced by execute().

{
  QStringList f = get_InputFiles();

  if (f.count() != 1) {
    printMessage(tr("cctw norm needs exactly 1 input file, rather than %1").arg(f.count()));
  } else {

    QFuture<void> f = QtConcurrent::run(this, &CctwApplication::runNorm);

    while (!f.isFinished()) {
      CctwThread::msleep(100);
      processEvents(QEventLoop::ExcludeUserInputEvents);
    }
  }
}

void CctwApplication::executeProject ( )

slot

Definition at line 1830 of file cctwapplication.cpp.

References CctwThread::msleep(), printMessage(), and runProject().

Referenced by execute().

{
  QStringList f = get_InputFiles();

  if (f.count() != 1) {
    printMessage(tr("cctw project needs exactly 1 input file, rather than %1").arg(f.count()));
  } else {

    QFuture<void> f = QtConcurrent::run(this, &CctwApplication::runProject);

    while (!f.isFinished()) {
      CctwThread::msleep(100);
      processEvents(QEventLoop::ExcludeUserInputEvents);
    }
  }
}

void CctwApplication::executeScriptFile ( QString  path )

slot

Definition at line 652 of file cctwapplication.cpp.

References CctwScriptEngine::checkForExceptions(), m_ScriptEngine, and printMessage().

Referenced by CctwqtMainWindow::doExecuteScriptFile(), and CctwScriptEngine::executeScriptFileFunc().

{
  if (m_ScriptEngine) {
    QFile f(path);

    if (f.open(QIODevice::ReadOnly)) {
      QString script = f.readAll();

      QScriptValue val = m_ScriptEngine->evaluate(script, path, 1);

      m_ScriptEngine->checkForExceptions();

      printMessage(tr("Result -> %1").arg(val.toString()));
    }
  }
}

void CctwApplication::executeTransform ( )

slot

Definition at line 1779 of file cctwapplication.cpp.

References CctwThread::msleep(), printMessage(), and runTransform().

Referenced by execute().

{
  QStringList f = get_InputFiles();

  if (f.count() != 1) {
    printMessage(tr("cctw transform needs exactly 1 input file, rather than %1").arg(f.count()));
  } else {

    QFuture<void> f = QtConcurrent::run(this, &CctwApplication::runTransform);

    while (!f.isFinished()) {
      CctwThread::msleep(100);
      processEvents(QEventLoop::ExcludeUserInputEvents);
    }
  }
}

void CctwApplication::initialize	(	int &	argc,
		char *	argv[]
	)

Definition at line 479 of file cctwapplication.cpp.

References decodeCommandLineArgs(), installHDF5ErrorHandler(), m_CompareData, m_InputData, m_OutputData, m_Parameters, m_PEIngressCommand, m_Saver, m_ScriptEngine, m_Transform, m_Transformer, m_Window, postStartup(), preStartup(), and readSettings().

Referenced by main().

{
  installHDF5ErrorHandler();

  decodeCommandLineArgs(argc, argv);

#ifdef WANT_IMPORT_COMMANDS
  m_ImportData       = new CctwImporter(this, "importData", this);
#endif

  m_CompareData      = new CctwComparer(this, "compareData", this);

  m_Parameters       = new CctwCrystalCoordinateParameters("parameters", this);

  m_InputData        = new CctwChunkedData(this,
                                           CctwIntVector3D(256,256,256),
                                           CctwIntVector3D(32, 32, 32),
                                            true,
                                           "inputData",
                                           this);
  m_InputData        -> allocateChunks();

  m_OutputData       = new CctwChunkedData(this,
                                           CctwIntVector3D(256,256,256),
                                           CctwIntVector3D(32, 32, 32),
                                           false,
                                           "outputData",
                                           this);
  m_OutputData       -> allocateChunks();

  m_Transform        = new CctwCrystalCoordinateTransform(m_Parameters, "transform", NULL, this);

  m_Transformer      = new CctwTransformer(this,
                                           m_InputData,
                                           m_OutputData,
                                           m_Transform, /*1, 1, 1,*/
                                           "transformer",
                                           this);

  m_PEIngressCommand = new CctwPEIngressCommand(this, "peingress", this);

  m_ScriptEngine     = new CctwScriptEngine(this, this);

#ifdef WANT_IMPORT_COMMANDS
  m_ScriptEngine->globalObject().setProperty("importData", m_ScriptEngine->newQObject(m_ImportData));
#endif

  m_ScriptEngine->globalObject().setProperty("compareData", m_ScriptEngine->newQObject(m_CompareData));
  m_ScriptEngine->globalObject().setProperty("inputData", m_ScriptEngine->newQObject(m_InputData));
  m_ScriptEngine->globalObject().setProperty("outputData", m_ScriptEngine->newQObject(m_OutputData));
  m_ScriptEngine->globalObject().setProperty("parameters", m_ScriptEngine->newQObject(m_Parameters));
  m_ScriptEngine->globalObject().setProperty("transform", m_ScriptEngine->newQObject(m_Transform));
  m_ScriptEngine->globalObject().setProperty("transformer", m_ScriptEngine->newQObject(m_Transformer));
  m_ScriptEngine->globalObject().setProperty("peingress", m_ScriptEngine->newQObject(m_PEIngressCommand));
  m_ScriptEngine->globalObject().setProperty("application", m_ScriptEngine->newQObject(this));
  m_ScriptEngine->globalObject().setProperty("globals", m_ScriptEngine->globalObject());

#ifndef NO_GUI
  readSettings();
#endif

  if (m_Saver) {
    m_Saver->start();
  }

#ifdef NO_GUI
  set_GuiWanted(false);
#else
  if (get_GuiWanted()) {
    m_Window                  = new CctwqtMainWindow(this);
  }

  if (m_Window) {
    m_Window->show();
  }
#endif

  preStartup();

  foreach(QString cmd, get_StartupCommands()) {
    QMetaObject::invokeMethod(this, "evaluateStartupCommand", Qt::QueuedConnection, Q_ARG(QString, cmd));
  }

  postStartup();

  if (!get_GuiWanted()) {
    QMetaObject::invokeMethod(this, "execute", Qt::QueuedConnection);
    QMetaObject::invokeMethod(this, "quit", Qt::QueuedConnection);
  }
}

int CctwApplication::inputChunkCount ( )

slot

Definition at line 1579 of file cctwapplication.cpp.

References CctwChunkedData::chunkCount, m_InputData, and CctwVector3D< T >::volume().

{
  return m_InputData->chunkCount().volume();
}

void CctwApplication::inputProject ( int  axes )

slot

Definition at line 1622 of file cctwapplication.cpp.

References m_Transformer.

Referenced by CctwScriptEngine::inputProjectFunc().

{
  if (m_Transformer) {
    m_Transformer->inputProject(m_Transformer->get_ProjectDestination(), axes);
  }
}

void CctwApplication::installHDF5ErrorHandler ( )

private

Definition at line 474 of file cctwapplication.cpp.

References cctwH5error().

Referenced by initialize().

{
  H5Eset_auto(H5E_DEFAULT, &cctwH5error, (void*) this);
}

void CctwApplication::loadDependencies ( QString  path )

slot

Definition at line 1298 of file cctwapplication.cpp.

References CctwTransformer::loadDependencies(), and m_Transformer.

Referenced by CctwqtMainWindow::doLoadDependencies().

{
  if (m_Transformer) {
    m_Transformer->loadDependencies(path);
  }
}

void CctwApplication::mergeInput ( QString  path )

slot

Definition at line 1643 of file cctwapplication.cpp.

References pushInputFile().

Referenced by CctwScriptEngine::mergeInputFunc().

{
  pushInputFile(path);
}

void CctwApplication::mergeOutput ( QString  path )

slot

Definition at line 1648 of file cctwapplication.cpp.

References CctwThread::msleep(), runMerge(), and setOutputData().

Referenced by CctwScriptEngine::mergeOutputFunc().

{
  setOutputData(path);

  QFuture<void> f = QtConcurrent::run(this, &CctwApplication::runMerge);

  while (!f.isFinished()) {
    CctwThread::msleep(100);
    processEvents(QEventLoop::ExcludeUserInputEvents);
  }
}

void CctwApplication::noDependencies ( )

slot

Definition at line 986 of file cctwapplication.cpp.

References CctwTransformer::clearDependencies(), and m_Transformer.

Referenced by CctwScriptEngine::noDependenciesFunc().

{
  if (m_Transformer) {
    m_Transformer->clearDependencies(0);
  }
}

void CctwApplication::onDebugChanged ( int  dbg )

privateslot

Definition at line 114 of file cctwapplication.cpp.

{
  if (g_DebugLevel) {
    g_DebugLevel->setDebugLevel(dbg);
  }
}

void CctwApplication::onProgress ( int  prg )

privateslot

Definition at line 121 of file cctwapplication.cpp.

References m_LastProgress, m_Window, and printMessage().

{
  int prog = (prg*100)/get_ProgressLimit();

  if (m_LastProgress.fetchAndStoreOrdered(prog) != prog) {
#ifdef NO_GUI
    if ((prog % 5 == 0)) {
//      printMessage(tr("%1% completed").arg(prog));
      printf("\r%d%% completed", prog);
      fflush(stdout);
      if (prog==100) {
        printf("\n");
        fflush(stdout);
      }
    }
#else
    if (m_Window == NULL && (prog % 5 == 0)) {
      printMessage(tr("%1% completed").arg(prog));
    }
#endif
  }
}

int CctwApplication::outputChunkCount ( )

slot

Definition at line 1584 of file cctwapplication.cpp.

References CctwChunkedData::chunkCount, m_OutputData, and CctwVector3D< T >::volume().

{
  return m_OutputData->chunkCount().volume();
}

void CctwApplication::outputProject ( int  axes )

slot

Definition at line 1629 of file cctwapplication.cpp.

References m_Transformer.

Referenced by CctwScriptEngine::outputProjectFunc().

{
  if (m_Transformer) {
    m_Transformer->outputProject(m_Transformer->get_ProjectDestination(), axes);
  }
}

CctwCrystalCoordinateParameters * CctwApplication::parameters ( ) const

slot

Definition at line 1518 of file cctwapplication.cpp.

References m_Parameters.

Referenced by CctwqtMainWindow::CctwqtMainWindow(), CctwTransformer::dependencies(), and CctwTransformer::transformChunkData().

{
  return m_Parameters;
}

void CctwApplication::partialDependencies ( QString  desc )

slot

Definition at line 979 of file cctwapplication.cpp.

References calculateDependencies().

Referenced by CctwScriptEngine::dependenciesFunc().

{
//  printMessage(tr("Partial dependencies of %1").arg(desc));

  calculateDependencies();
}

void CctwApplication::plotCurves	(	QwtPlotCurve *	c1,
		QwtPlotCurve *	c2,
		QwtPlotCurve *	c3,
		QwtPlotCurve *	c4
	)

Definition at line 1571 of file cctwapplication.cpp.

References m_Window, and CctwqtMainWindow::plotCurves().

Referenced by CctwPEIngressCommand::analyzeSpecDataFile().

{
  if (m_Window) {
    m_Window->plotCurves(c1, c2, c3, c4);
  }
}

void CctwApplication::postStartup ( )

private

Definition at line 1897 of file cctwapplication.cpp.

Referenced by initialize().

{
}

void CctwApplication::preStartup ( )

private

Definition at line 1879 of file cctwapplication.cpp.

References m_InputData, m_OutputData, MergeMode, NormMode, and TransformMode.

Referenced by initialize().

{
  int m = get_Mode();

  if (m == TransformMode) {
    m_InputData -> setDataSource(get_InputFiles().at(0));
    m_OutputData -> setDataSource(get_OutputFile());
  }

  if (m == MergeMode) {
    m_OutputData->set_Normalization(0);
  }

  if (m == NormMode) {
    m_OutputData->set_Normalization(1);
  }
}

void CctwApplication::printHDF5errors

(

)

Definition at line 456 of file cctwapplication.cpp.

References cctwH5print(), and printMessage().

Referenced by cctwH5error().

{
  printMessage("HDF5 Error occurred");

  H5Ewalk(H5E_DEFAULT, H5E_WALK_DOWNWARD, &cctwH5print, this);
}

void CctwApplication::printLine ( QString  line )

slot

Definition at line 577 of file cctwapplication.cpp.

References m_Window, and CctwqtMainWindow::printLine().

Referenced by showHelp(), and showVersion().

{
#ifdef NO_GUI
  printf("%s\n", qPrintable(msg));
#else
  if (m_Window) {
    m_Window->printLine(msg);
  } else {
    printf("%s\n", qPrintable(msg));
  }
#endif
}

void CctwApplication::printMessage ( QString  msg, QDateTime  dt = QDateTime::currentDateTime()  )

slot

Definition at line 590 of file cctwapplication.cpp.

References m_Window, and CctwqtMainWindow::printMessage().

Referenced by autoOutputFile(), calculateDependencies(), cctwH5print(), clearWriteSettings(), decodeCommandLineArgsForUnix(), evaluateCommand(), evaluateStartupCommand(), executeMerge(), executeNorm(), executeProject(), executeScriptFile(), executeTransform(), onProgress(), CctwScriptEngine::printFunc(), printHDF5errors(), readSettings(), reportDependencies(), reportInputChunkCounts(), reportOutputChunkCounts(), runMerge(), setAnglesData(), setAnglesDataset(), setChi(), setCompression(), setInputChunks(), setInputData(), setInputDataset(), setMaskData(), setMaskDataset(), setNormalization(), setOmega(), setOutputChunks(), setOutputData(), setOutputDataset(), setOutputDims(), setPhi(), setThreads(), setTwoTheta(), testing(), and writeSettings().

{
#ifdef NO_GUI
  printf("%s\n", qPrintable(msg));
  fflush(stdout);
#else
  if (m_Window) {
    m_Window->printMessage(msg, dt);
  } else {
    printf("%s\n", qPrintable(msg));
  }
#endif
}

void CctwApplication::pushInputFile ( QString  path )

private

Definition at line 807 of file cctwapplication.cpp.

Referenced by decodeCommandLineArgsForUnix(), and mergeInput().

{
  prop_InputFiles()->appendValue(path);
}

void CctwApplication::readSettings ( )

slot

Definition at line 993 of file cctwapplication.cpp.

Referenced by CctwqtMainWindow::doLoadSettings(), initialize(), CctwScriptEngine::loadPreferencesFunc(), and readSettings().

{
  QSettings settings("xray.aps.anl.gov", "cctw");

  readSettings(&settings);
}

void CctwApplication::readSettings ( QString  path )

slot

Definition at line 1000 of file cctwapplication.cpp.

References printMessage(), and readSettings().

{
  QSettings settings(path, QSettings::IniFormat);

  printMessage(tr("Reading settings from %1").arg(path));

  readSettings(&settings);
}

void CctwApplication::readSettings ( QSettings *  settings )

private

Definition at line 1009 of file cctwapplication.cpp.

References m_CompareData, m_InputData, m_OutputData, m_Parameters, m_PEIngressCommand, m_Transform, m_Transformer, CctwObject::readSettings(), and CctwTransformer::readSettings().

{
  QcepProperty::readSettings(this, &staticMetaObject, "cctw", settings, true);

  if (m_Parameters) {
    m_Parameters->readSettings(settings, "parameters");
  }

#ifdef WANT_IMPORT_COMMANDS
  if (m_ImportData) {
    m_ImportData->readSettings(settings, "importData");
  }
#endif

  if (m_CompareData) {
    m_CompareData->readSettings(settings, "compareData");
  }

  if (m_InputData) {
    m_InputData->readSettings(settings, "inputData");
  }

  if (m_OutputData) {
    m_OutputData->readSettings(settings, "outputData");
  }

  if (m_Transform) {
    m_Transform->readSettings(settings, "transform");
  }

  if (m_Transformer) {
    m_Transformer->readSettings(settings, "transformer");
  }

  if (m_PEIngressCommand) {
    m_PEIngressCommand->readSettings(settings, "peingress");
  }
}

void CctwApplication::reportDependencies ( )

slot

Definition at line 1305 of file cctwapplication.cpp.

References CctwChunkedData::chunkCount, CctwChunkedData::chunkIndexFromNumber(), CctwChunkedData::chunkNumberFromIndex(), m_InputData, printMessage(), CctwDataChunk::reportDependencies(), CctwVector3D< T >::volume(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

{
  CctwIntVector3D chunks = m_InputData->chunkCount();

  set_Halting(false);

  printMessage(tr("Check mapping"));

  for (int n=0; n<chunks.volume(); n++) {
    if (get_Halting()) {
      break;
    } else {
      CctwIntVector3D idx = m_InputData->chunkIndexFromNumber(n);
      int nn = m_InputData->chunkNumberFromIndex(idx);

      if (nn != n) {
        printMessage(tr("Problem: %1 => [%2,%3,%4] => %5").arg(n).arg(idx.x()).arg(idx.y()).arg(idx.z()).arg(nn));
      }
    }
  }

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);
          int n = m_InputData->chunkNumberFromIndex(idx);
          CctwIntVector3D idx2 = m_InputData->chunkIndexFromNumber(n);

          if (idx != idx2) {
            printMessage(tr("Problem: [%1,%2,%3] => %4 => [%5,%6,%7]")
                         .arg(idx.x()).arg(idx.y()).arg(idx.z())
                         .arg(n)
                         .arg(idx2.x()).arg(idx2.y()).arg(idx2.z()));
          }
        }
      }
    }
  }

  printMessage(tr("Input Data Dependencies"));

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);

          CctwDataChunk *chunk = m_InputData -> chunk(idx);

          if (chunk) {
            chunk->reportDependencies();
          }
        }
      }
    }
  }
}

void CctwApplication::reportInputChunkCounts ( )

slot

Definition at line 1432 of file cctwapplication.cpp.

References CctwChunkedData::chunk(), CctwChunkedData::chunkCount, CctwDataChunk::dependencyCount(), m_InputData, printMessage(), CctwVector3D< T >::volume(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

{
  CctwIntVector3D chunks = m_InputData->chunkCount();

  set_Halting(false);
  set_Progress(0);
  set_ProgressLimit(chunks.volume());

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      QString aLine;

      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);

          CctwDataChunk *chunk = m_InputData->chunk(idx);

          if (chunk) {
            int nDeps = chunk->dependencyCount();

            if (nDeps > 9) {
              aLine += "*";
            } else if (nDeps >= 1) {
              aLine += tr("%1").arg(nDeps);
            } else {
              aLine += "0";
            }
          } else {
            aLine += "0";
          }
        }
      }

      printMessage(aLine);
    }

    printMessage("");
  }
}

void CctwApplication::reportInputDependencies ( )

slot

Definition at line 1400 of file cctwapplication.cpp.

References CctwChunkedData::chunkCount, m_InputData, CctwVector3D< T >::volume(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

{
  CctwIntVector3D chunks = m_InputData->chunkCount();

  set_Halting(false);
  set_Progress(0);
  set_ProgressLimit(chunks.volume());

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);

          reportInputDependencies(idx);
        }
      }
    }
  }
}

void CctwApplication::reportInputDependencies ( CctwIntVector3D  idx )

slot

Definition at line 1423 of file cctwapplication.cpp.

References CctwChunkedData::chunk(), m_InputData, and CctwDataChunk::reportDependencies().

{
  CctwDataChunk *chunk = m_InputData->chunk(idx);

  if (chunk) {
    chunk->reportDependencies();
  }
}

void CctwApplication::reportOutputChunkCounts ( )

slot

Definition at line 1475 of file cctwapplication.cpp.

References CctwChunkedData::chunk(), CctwChunkedData::chunkCount, CctwDataChunk::dependencyCount(), m_OutputData, printMessage(), CctwVector3D< T >::volume(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

{
  CctwIntVector3D chunks = m_OutputData->chunkCount();

  set_Halting(false);
  set_Progress(0);
  set_ProgressLimit(chunks.volume());

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      QString aLine;

      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);

          CctwDataChunk *chunk = m_OutputData->chunk(idx);

          if (chunk) {
            int nDeps = chunk->dependencyCount();

            if (nDeps > 9) {
              aLine += "*";
            } else if (nDeps >= 1) {
              aLine += tr("%1").arg(nDeps);
            } else {
              aLine += "0";
            }
          } else {
            aLine += "0";
          }
        }
      }

      printMessage(aLine);
    }

    printMessage("");
  }
}

void CctwApplication::reportOutputDependencies ( )

slot

Definition at line 1368 of file cctwapplication.cpp.

References CctwChunkedData::chunkCount, m_OutputData, CctwVector3D< T >::volume(), CctwVector3D< T >::x(), CctwVector3D< T >::y(), and CctwVector3D< T >::z().

{
  CctwIntVector3D chunks = m_OutputData->chunkCount();

  set_Halting(false);
  set_Progress(0);
  set_ProgressLimit(chunks.volume());

  for (int z=0; z<chunks.z(); z++) {
    for (int y=0; y<chunks.y(); y++) {
      for (int x=0; x<chunks.x(); x++) {
        if (get_Halting()) {
          break;
        } else {
          CctwIntVector3D idx(x,y,z);

          reportOutputDependencies(idx);
        }
      }
    }
  }
}

void CctwApplication::reportOutputDependencies ( CctwIntVector3D  idx )

slot

Definition at line 1391 of file cctwapplication.cpp.

References CctwChunkedData::chunk(), m_OutputData, and CctwDataChunk::reportDependencies().

{
  CctwDataChunk *chunk = m_OutputData->chunk(idx);

  if (chunk) {
    chunk->reportDependencies();
  }
}

void CctwApplication::runMerge ( )

slot

Definition at line 1674 of file cctwapplication.cpp.

References autoChunkSizes(), autoOutputFile(), CctwChunkedData::chunkCount, CctwChunkedData::dimensions, inputFiles, m_OutputData, m_Transformer, CctwChunkedData::mergeChunk(), CctwChunkedData::openInputFile(), CctwChunkedData::openOutputFile(), outputFile, printMessage(), CctwChunkedData::readChunk(), CctwChunkedData::setChunkSize(), CctwChunkedData::setDataSource(), CctwChunkedData::setDimensions(), CctwVector3D< T >::volume(), and CctwChunkedData::writeChunk().

Referenced by executeMerge(), mergeOutput(), and runNorm().

{
  QVector < CctwChunkedData* > inputFiles;

  CctwChunkedData* outputFile = NULL;

  CctwIntVector3D hdfChunkSize(0,0,0);
  CctwIntVector3D dims(0,0,0);

  if (get_InputFiles().count() < 1) {
    printMessage("No merge inputs given");
    goto exit;
  }

  foreach(QString path, get_InputFiles()) {
    CctwChunkedData* inputFile = new CctwChunkedData(this, CctwIntVector3D(0,0,0), CctwIntVector3D(10,10,10), true, path, NULL);

    if (inputFile) {
      inputFile->setDataSource(path);
      if (inputFile->openInputFile()) {
        printMessage(tr("Opened %1 successfully").arg(path));
        inputFile->setChunkSize(inputFile->get_HDFChunkSize());
      } else {
        delete inputFile;
        printMessage(tr("Failed to open %1").arg(path));
        goto exit;
      }
    }

    inputFiles.append(inputFile);
  }

  hdfChunkSize = inputFiles[0]->get_HDFChunkSize();
  dims         = inputFiles[0]->dimensions();

  foreach(CctwChunkedData* inputFile, inputFiles) {
    if (inputFile->get_HDFChunkSize() != hdfChunkSize) {
      printMessage("Input datasets do not have the same HDF chunk sizes");
      goto exit;
    }

    if (inputFile->dimensions() != dims) {
      printMessage("Input datasets do not have the same dimensions");
      goto exit;
    }

    inputFile->setChunkSize(hdfChunkSize);
  }

  autoOutputFile(".mrg.nxs#/entry/data");
  autoChunkSizes();

  m_OutputData->setDataSource(get_OutputFile());
  m_OutputData->set_HDFChunkSize(hdfChunkSize);
  m_OutputData->set_Compression(m_Transformer->get_Compression());
  m_OutputData->setDimensions(dims);
  m_OutputData->setChunkSize(hdfChunkSize);
  m_OutputData->set_Normalization(m_Transformer->get_Normalization());

  if (m_OutputData->openOutputFile()) {
    int nchunks = m_OutputData->chunkCount().volume();

    set_Progress(0);
    set_ProgressLimit(nchunks);

    for (int i=0; i<nchunks; i++) {
      set_Progress(i);

      foreach(CctwChunkedData* inputFile, inputFiles) {
        CctwDataChunk *inChunk = inputFile->readChunk(i);
        m_OutputData->mergeChunk(inChunk);

        delete inChunk;
      }

      m_OutputData->writeChunk(i);
    }
  } else {
    printMessage(tr("Could not open %1 for output").arg(get_OutputFile()));
    goto exit;
  }

exit:

  foreach(CctwChunkedData* inputFile, inputFiles) {
    if (inputFile) {
      delete inputFile;
    }
  }
}

void CctwApplication::runNorm ( )

slot

Definition at line 1765 of file cctwapplication.cpp.

References runMerge().

Referenced by executeNorm().

{
  runMerge();
}

void CctwApplication::runProject ( )

slot

Definition at line 1770 of file cctwapplication.cpp.

References m_InputData, m_Transformer, and CctwChunkedData::setDataSource().

Referenced by executeProject().

{
  m_InputData->setDataSource(get_InputFiles().at(0));

  if (m_Transformer) {
    m_Transformer->inputProject(get_OutputFile(), 7);
  }
}

void CctwApplication::runTransform ( )

slot

Definition at line 1660 of file cctwapplication.cpp.

References autoOutputFile(), m_InputData, m_OutputData, CctwChunkedData::setAnglesSource(), CctwChunkedData::setDataSource(), CctwChunkedData::setMaskSource(), CctwChunkedData::setWeightsSource(), and transform().

Referenced by executeTransform().

{
  m_InputData->setDataSource(get_InputFiles().at(0));
  m_InputData->setMaskSource(get_MaskFile());
  m_InputData->setAnglesSource(get_AnglesFile());
  m_InputData->setWeightsSource(get_WeightsFile());

  autoOutputFile(".nxs");

  m_OutputData->setDataSource(get_OutputFile());

  transform("");
}

void CctwApplication::saveDependencies ( QString  path )

slot

Definition at line 1291 of file cctwapplication.cpp.

References m_Transformer, and CctwTransformer::saveDependencies().

Referenced by CctwqtMainWindow::doSaveDependencies().

{
  if (m_Transformer) {
    m_Transformer->saveDependencies(path);
  }
}

QcepSettingsSaverWPtr CctwApplication::saver

(

)

const

Definition at line 109 of file cctwapplication.cpp.

References m_Saver.

{
  return m_Saver;
}

void CctwApplication::setAnglesData ( QString  data )

slot

Definition at line 812 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setAnglesSource().

{
  if (m_InputData) {
    printMessage(tr("Set Angles to %1").arg(data));

    m_InputData->setAnglesSource(data);
  }
}

void CctwApplication::setAnglesDataset ( QString  data )

slot

Definition at line 821 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setAnglesDataset().

{
  if (m_InputData) {
    printMessage(tr("Set Angles dataset to %1").arg(data));

    m_InputData->setAnglesDataset(data);
  }
}

void CctwApplication::setChi ( QString  data )

slot

Definition at line 913 of file cctwapplication.cpp.

References m_Parameters, printMessage(), and CctwCrystalCoordinateParameters::setChi().

Referenced by CctwScriptEngine::setChiFunc().

{
  if(m_Parameters) {
    printMessage(tr("Set Chi Values to %1").arg(data));

    m_Parameters->setChi(data);
  }
}

void CctwApplication::setCompression ( QString  data )

slot

Definition at line 1610 of file cctwapplication.cpp.

References m_OutputData, m_Transformer, and printMessage().

Referenced by CctwScriptEngine::compressionFunc().

{
  int v = data.toInt();

  if (m_Transformer) {
    printMessage(tr("Set compression to %1").arg(v));

    m_Transformer->set_Compression(v);
    m_OutputData->set_Compression(v);
  }
}

void CctwApplication::setInputChunks ( QString  data )

slot

Definition at line 771 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setChunks().

Referenced by CctwScriptEngine::setInputChunksFunc().

{
  if (m_InputData) {
    printMessage(tr("Set input chunk size to %1").arg(data));

    m_InputData->setChunks(data);
  }
}

void CctwApplication::setInputData ( QString  data )

slot

Definition at line 762 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setDataSource().

Referenced by CctwScriptEngine::setInputDataFunc().

{
  if (m_InputData) {
    printMessage(tr("Set input data to %1").arg(data));

    m_InputData->setDataSource(data);
  }
}

void CctwApplication::setInputDataset ( QString  data )

slot

Definition at line 780 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setDataset().

Referenced by CctwScriptEngine::setInputDatasetFunc().

{
  if (m_InputData) {
    printMessage(tr("Set input data set name to %1").arg(data));

    m_InputData->setDataset(data);
  }
}

void CctwApplication::setMaskData ( QString  data )

slot

Definition at line 789 of file cctwapplication.cpp.

References m_InputData, and printMessage().

{
  if (m_InputData) {
    printMessage(tr("Set mask to %1").arg(data));

    set_MaskFile(data);
  }
}

void CctwApplication::setMaskDataset ( QString  data )

slot

Definition at line 798 of file cctwapplication.cpp.

References m_InputData, printMessage(), and CctwChunkedData::setMaskDataset().

{
  if (m_InputData) {
    printMessage(tr("Set mask dataset to %1").arg(data));

    m_InputData->setMaskDataset(data);
  }
}

void CctwApplication::setNormalization ( QString  data )

slot

Definition at line 1598 of file cctwapplication.cpp.

References m_OutputData, m_Transformer, and printMessage().

Referenced by CctwScriptEngine::normalizationFunc().

{
  int v = data.toInt();

  if (m_Transformer) {
    printMessage(tr("Set normalization to %1").arg(v));

    m_Transformer->set_Normalization(v);
    m_OutputData->set_Normalization(v);
  }
}

void CctwApplication::setOmega ( QString  data )

slot

Definition at line 886 of file cctwapplication.cpp.

References m_Parameters, printMessage(), and CctwCrystalCoordinateParameters::setOmega().

Referenced by CctwScriptEngine::setOmegaFunc().

{
  if(m_Parameters) {
    printMessage(tr("Set Omega Values to %1").arg(data));

    m_Parameters->setOmega(data);
  }
}

void CctwApplication::setOutputChunks ( QString  data )

slot

Definition at line 848 of file cctwapplication.cpp.

References m_OutputData, printMessage(), and CctwChunkedData::setChunks().

Referenced by CctwScriptEngine::setOutputChunksFunc().

{
  if (m_OutputData) {
    printMessage(tr("Set output chunk size to %1").arg(data));

    m_OutputData->setChunks(data);
  }
}

void CctwApplication::setOutputData ( QString  data )

slot

Definition at line 830 of file cctwapplication.cpp.

References m_OutputData, printMessage(), and CctwChunkedData::setDataSource().

Referenced by mergeOutput(), and CctwScriptEngine::setOutputDataFunc().

{
  if (m_OutputData) {
    printMessage(tr("Set output data to %1").arg(data));

    m_OutputData->setDataSource(data);
  }
}

void CctwApplication::setOutputDataset ( QString  data )

slot

Definition at line 857 of file cctwapplication.cpp.

References m_OutputData, printMessage(), and CctwChunkedData::setDataset().

Referenced by CctwScriptEngine::setOutputDatasetFunc().

{
  if (m_OutputData) {
    printMessage(tr("Set output data set name to %1").arg(data));

    m_OutputData->setDataset(data);
  }
}

void CctwApplication::setOutputDims ( QString  data )

slot

Definition at line 839 of file cctwapplication.cpp.

References m_OutputData, printMessage(), and CctwChunkedData::setDims().

Referenced by CctwScriptEngine::setOutputDimsFunc().

{
  if (m_OutputData) {
    printMessage(tr("Set output dataset dimensions to %1").arg(data));

    m_OutputData->setDims(data);
  }
}

void CctwApplication::setPhi ( QString  data )

slot

Definition at line 904 of file cctwapplication.cpp.

References m_Parameters, printMessage(), and CctwCrystalCoordinateParameters::setPhi().

Referenced by CctwScriptEngine::setPhiFunc().

{
  if(m_Parameters) {
    printMessage(tr("Set Phi Values to %1").arg(data));

    m_Parameters->setPhi(data);
  }
}

void CctwApplication::setProjectOutput ( QString  dir )

slot

Definition at line 1636 of file cctwapplication.cpp.

References m_Transformer.

Referenced by CctwScriptEngine::setProjectOutputFunc().

{
  if (m_Transformer) {
    m_Transformer->set_ProjectDestination(dir);
  }
}

void CctwApplication::setSubset ( QString  desc )

slot

Definition at line 866 of file cctwapplication.cpp.

References m_Transformer.

Referenced by CctwScriptEngine::setSubsetFunc().

{
  if (m_Transformer) {
    m_Transformer->set_Subset(desc);
  }
}

void CctwApplication::setThreads ( QString  desc )

slot

Definition at line 745 of file cctwapplication.cpp.

References printMessage().

Referenced by CctwScriptEngine::setThreadsFunc().

{
  printMessage(tr("Set number of pool threads to %1").arg(desc));

  bool ok;

  int n = desc.toInt(&ok);

  if (ok) {
    if (n == 0) {
      QThreadPool::globalInstance()->setMaxThreadCount(QThread::idealThreadCount());
    } else {
      QThreadPool::globalInstance()->setMaxThreadCount(n);
    }
  }
}

QString CctwApplication::settingsScript ( )

slot

Definition at line 1116 of file cctwapplication.cpp.

References m_InputData, m_OutputData, m_Parameters, m_PEIngressCommand, m_Transform, m_Transformer, and CctwObject::settingsScript().

Referenced by Cctwtcl_Parameters_Cmd().

{
  QString res;

  if (m_Parameters) {
    res += m_Parameters->settingsScript();
  }

//  if (m_ImportData) {
//    res += m_ImportData->settingsScript();
//  }

//  if (m_CompareData) {
//    res += m_CompareData->settingsScript();
//  }

  if (m_InputData) {
    res += m_InputData->settingsScript();
  }

  if (m_OutputData) {
    res += m_OutputData->settingsScript();
  }

  if (m_Transform) {
    res += m_Transform->settingsScript();
  }

  if (m_Transformer) {
    res += m_Transformer->settingsScript();
  }

  if (m_PEIngressCommand) {
    res += m_PEIngressCommand->settingsScript();
  }

  return res;
}

void CctwApplication::setTwoTheta ( QString  data )

slot

Definition at line 895 of file cctwapplication.cpp.

References m_Parameters, printMessage(), and CctwCrystalCoordinateParameters::setTwoTheta().

Referenced by CctwScriptEngine::setTwoThetaFunc().

{
  if(m_Parameters) {
    printMessage(tr("Set Two Theta Values to %1").arg(data));

    m_Parameters->setTwoTheta(data);
  }
}

void CctwApplication::showHelp ( QString  about )

slot

Definition at line 669 of file cctwapplication.cpp.

References printLine().

Referenced by CctwScriptEngine::showHelpFunc().

{
  printLine(tr(
              "\n"
              "usage: %1 transform|merge|norm|project <inputs> <options>\n"
              "\n"
              "where inputs are one or more hdf dataset refs (in url format)\n"
              "the file part of the URL gives the hdf/nexus file, and the 'fragment'\n"
              "(separated by a # character) gives the hdf dataset path\n"
              "\n"
              "where options are:\n"
              "\n"
              "--help, -h                       display this text\n"
              "--version                        display version info\n"
              "--verbosity[=n], -v[=n]          set verbosity to 'n', or increment it if 'n' not given\n"
              "--threads <n>, -j <n>            set number of worker threads\n"
              "--input <f>, -i <f>              specify input data (url format)\n"
              "--inputchunks <cks>              specify input chunk size (e.g. 32x32x32 or 32)\n"
              "--inputdataset <dsn>             specify input dataset path\n"
              "--mask <f>, -m <f>               specify mask data (url format)\n"
              "--maskdataset <dsn>              specify mask dataset path\n"
              "--angles <f>, -a <f>             specify angles data (url format\n"
              "--anglesdataset <f>              specify angles dataset path\n"
              "--omega <angs>                   specify omega angles (url-angles format\n"
              "--twotheta <angs>                specify two theta angles (url-angles format\n"
              "--chi <angs>                     specify chi angles (url-angles format\n"
              "--phi <angs>                     specify phi angles (url-angles format\n"
              "--weights <f>, -w <f>            specify weights data (url format)\n"
              "--output <f>, -o <f>             specify output data (url format)\n"
              "--outputdims <dims>              specify output dimensions (e.g. 2048x2048x2048 or 2048)\n"
              "--outputchunks <cks>             specify output chunk size (e.g. 32x32x32 or 32)\n"
              "--outputdataset <dsn>            specify output dataset path\n"
              "--normalization <n>, -N <n>      normalize output file(s) (0=no norm, 1=norm)\n"
              "--compression <n>, -z <n>        compress output files (-ve = LZF, 0 = none, 1-9 = GZIP\n"
              "--subset <n/m>, -S <n/m>         specify subset of input data to operate on (or all if blank)\n"
              "--transform, -t                  transform all or part of the data\n"
              "--depends, -d                    calculate dependencies for all or part of the data\n"
              "--nodepends, -x                  clear dependencies\n"
              "--debug <n>, -D <n>              set debug level\n"
              "--preferences <f>, -p <f>        read settings from file <f>\n"
              "--gui, -g                        use GUI interface if available\n"
              "--nogui, -n                      no GUI interface\n"
              "--command <cmd>, -c <cmd>        execute command <cmd>\n"
              "--script <f>, -s <f>             run script in file <f>\n"
              "--iproject {=n}                  project input dataset (along x=1,y=2,z=4 axes)\n"
              "--oproject {=n}                  project output dataset (along x=1,y=2,z=4 axes)\n"
              "--projectout <p>                 prefix for projected output files (add .x.tif, .y.tif or .z.tif)\n"
              "--mergein <f>                    specify an input dataset to merge (url format)\n"
              "--mergeout <f>                   merge (previously specified) datasets into output (url format)\n"
              "\n"
              "Where <angs> may be:\n"
              "A single numeric value           set the angle to the given value\n"
              "A comma separated number pair    set starting angle and step\n"
//              "A ref to an HDF scalar value     set the angle to the value\n"
//              "A ref to an HDF group containing 'start' and 'step' - set start and step accordingly\n"
              "A ref to an HDF array            set angles to values from array\n"
              "\n"
              "Examples:\n"
              "cctwcli transform file1.nxs\\#/data/entry/v -o xform.nxs\\#/data/entry/v\n"
              "cctwcli merge file1.nxs\\#/data/entry/v file2.nxs\\#/data/entry/v -o merge.nxs\\#/data/entry/v\n"
              ).arg(arguments().at(0)));
}

void CctwApplication::showVersion ( )

slot

Definition at line 732 of file cctwapplication.cpp.

References printLine().

Referenced by CctwScriptEngine::showVersionFunc().

{
  printLine(tr("cctw   version " STR(CCTW_VERSION)));
  printLine(tr("qt     version %1").arg(qVersion()));
  printLine(tr("ceplib version " STR(QCEPLIB_VERSION)));
  printLine(tr("hdf5   version " STR(QCEPLIB_HDF5_VERSION)));
#ifndef NO_GUI
  printLine(tr("qwt    version " STR(QCEPLIB_QWT_VERSION)));
#endif
  printLine(tr("tiff   version " STR(QCEPLIB_TIFF_VERSION)));
  printLine(tr("cbf    version " STR(QCEPLIB_CBF_VERSION)));
}

void CctwApplication::startupCommand ( QString  cmd )

private

Definition at line 155 of file cctwapplication.cpp.

Referenced by decodeCommandLineArgsForUnix().

{
  prop_StartupCommands()->appendValue(cmd);
}

void CctwApplication::testing ( )

slot

Definition at line 1589 of file cctwapplication.cpp.

References printMessage(), and CctwVector3D< T >::toString().

{
  CctwDoubleVector3D dv1(1.2,2.2,3.2), dv2(-1.2,-2.2,-3.2);

  CctwIntVector3D iv1(dv1), iv2(dv2);

  printMessage(tr("iv1 = %1, iv2 = %2").arg(iv1.toString()).arg(iv2.toString()));
}

void CctwApplication::transform ( QString  desc )

slot

Definition at line 873 of file cctwapplication.cpp.

References m_Transformer, CctwTransformer::simpleTransform(), and CctwTransformer::transform().

Referenced by calculateChunkDependencies(), runTransform(), and CctwScriptEngine::transformFunc().

{
//  printMessage(tr("Partial transform of %1").arg(desc));

  if (m_Transformer) {
    if (m_Transformer->get_UseDependencies()) {
      m_Transformer->transform();
    } else {
      m_Transformer->simpleTransform();
    }
  }
}

void CctwApplication::wait ( QString  msg )

slot

Definition at line 604 of file cctwapplication.cpp.

References waitCompleted().

Referenced by CctwScriptEngine::waitFunc().

{
  waitCompleted();

//  printMessage(tr("Wait: %1").arg(msg));
}

void CctwApplication::waitCompleted ( )

slot

Definition at line 1533 of file cctwapplication.cpp.

References m_WorkOutstanding, and CctwThread::msleep().

Referenced by calculateDependencies(), CctwImporter::importData(), CctwTransformer::simpleTransform(), CctwTransformer::transform(), and wait().

{
  while (m_WorkOutstanding.fetchAndAddOrdered(0) > 0) {
    CctwThread::msleep(100);
    processEvents(QEventLoop::ExcludeUserInputEvents);
  }
}

void CctwApplication::workCompleted ( int  amt )

slot

Definition at line 1528 of file cctwapplication.cpp.

References m_WorkOutstanding.

Referenced by calculateChunkDependencies(), CctwImporter::importDataFrame(), CctwImporter::readDataFrameToBuffer(), and CctwTransformer::runTransformChunkNumber().

{
  m_WorkOutstanding.fetchAndAddOrdered(-amt);
}

int CctwApplication::workOutstanding ( )

slot

Definition at line 1541 of file cctwapplication.cpp.

References m_WorkOutstanding.

{
  return m_WorkOutstanding.fetchAndAddOrdered(0);
}

void CctwApplication::writeSettings ( )

slot

Definition at line 1048 of file cctwapplication.cpp.

References printMessage().

Referenced by clearWriteSettings(), doAboutToQuit(), CctwqtMainWindow::doSaveSettings(), and writeSettings().

{
  QSettings settings("xray.aps.anl.gov", "cctw");

  printMessage(tr("Writing default settings"));

  writeSettings(&settings);
}

void CctwApplication::writeSettings ( QString  path )

slot

Definition at line 1068 of file cctwapplication.cpp.

References printMessage(), and writeSettings().

{
  QSettings settings(path, QSettings::IniFormat);

  printMessage(tr("Writing settings to %1").arg(path));

  writeSettings(&settings);
}

void CctwApplication::writeSettings ( QSettings *  settings )

private

Definition at line 1077 of file cctwapplication.cpp.

References m_CompareData, m_InputData, m_OutputData, m_Parameters, m_PEIngressCommand, m_Transform, m_Transformer, CctwObject::writeSettings(), and CctwTransformer::writeSettings().

{
  QcepProperty::writeSettings(this, &staticMetaObject, "cctw", settings, true);

  if (m_Parameters) {
    m_Parameters->writeSettings(settings, "parameters");
  }

#ifdef WANT_IMPORT_COMMANDS
  if (m_ImportData) {
    m_ImportData->writeSettings(settings, "importData");
  }
#endif

  if (m_CompareData) {
    m_CompareData->writeSettings(settings, "compareData");
  }

  if (m_InputData) {
    m_InputData->writeSettings(settings, "inputData");
  }

  if (m_OutputData) {
    m_OutputData->writeSettings(settings, "outputData");
  }

  if (m_Transform) {
    m_Transform->writeSettings(settings, "transform");
  }

  if (m_Transformer) {
    m_Transformer->writeSettings(settings, "transformer");
  }

  if (m_PEIngressCommand) {
    m_PEIngressCommand->writeSettings(settings, "peingress");
  }
}

Member Data Documentation

CctwComparer* CctwApplication::m_CompareData

Definition at line 195 of file cctwapplication.h.

Referenced by CctwqtMainWindow::doCompareHDF5(), initialize(), readSettings(), and writeSettings().

QAtomicInt CctwApplication::m_DependencyCounter

private

Definition at line 208 of file cctwapplication.h.

Referenced by calculateChunkDependencies(), and calculateDependencies().

CctwChunkedData* CctwApplication::m_InputData

Definition at line 196 of file cctwapplication.h.

Referenced by calculateChunkDependencies(), calculateDependencies(), CctwqtMainWindow::CctwqtMainWindow(), Cctwtcl_Input_Cmd(), Cctwtcl_Transform_Cmd(), CctwqtSetupTransformDialog::copyParametersToDialog(), CctwqtMainWindow::doBrowseInputFile(), CctwqtMainWindow::doProjectInput(), initialize(), inputChunkCount(), preStartup(), readSettings(), reportDependencies(), reportInputChunkCounts(), CctwqtMainWindow::reportInputDependencies(), reportInputDependencies(), runProject(), runTransform(), setAnglesData(), setAnglesDataset(), setInputChunks(), setInputData(), setInputDataset(), setMaskData(), setMaskDataset(), settingsScript(), and writeSettings().

QAtomicInt CctwApplication::m_LastProgress

private

Definition at line 210 of file cctwapplication.h.

Referenced by onProgress().

QcepObjectNamer CctwApplication::m_ObjectNamer

Definition at line 187 of file cctwapplication.h.

CctwChunkedData* CctwApplication::m_OutputData

Definition at line 197 of file cctwapplication.h.

Referenced by calculateChunkDependencies(), CctwqtMainWindow::CctwqtMainWindow(), Cctwtcl_Merge_Cmd(), Cctwtcl_Output_Cmd(), CctwqtMainWindow::doProjectOutput(), CctwqtMainWindow::doSetupOutput(), initialize(), outputChunkCount(), preStartup(), readSettings(), reportOutputChunkCounts(), CctwqtMainWindow::reportOutputDependencies(), reportOutputDependencies(), runMerge(), runTransform(), setCompression(), setNormalization(), setOutputChunks(), setOutputData(), setOutputDataset(), setOutputDims(), settingsScript(), and writeSettings().

CctwCrystalCoordinateParameters* CctwApplication::m_Parameters

Definition at line 191 of file cctwapplication.h.

Referenced by calculateChunkDependencies(), CctwqtMainWindow::CctwqtMainWindow(), CctwqtSetupTransformDialog::copyDialogToParameters(), CctwqtSetupTransformDialog::copyParametersToDialog(), initialize(), parameters(), readSettings(), setChi(), setOmega(), setPhi(), settingsScript(), setTwoTheta(), and writeSettings().

CctwPEIngressCommand* CctwApplication::m_PEIngressCommand

Definition at line 201 of file cctwapplication.h.

Referenced by analyzePEMetaData(), analyzeSpecDataFile(), initialize(), readSettings(), settingsScript(), and writeSettings().

QcepSettingsSaverPtr CctwApplication::m_Saver

Definition at line 202 of file cctwapplication.h.

Referenced by initialize(), and saver().

CctwScriptEngine* CctwApplication::m_ScriptEngine

Definition at line 200 of file cctwapplication.h.

Referenced by evaluate(), evaluateCommand(), evaluateStartupCommand(), executeScriptFile(), and initialize().

CctwCrystalCoordinateTransform* CctwApplication::m_Transform

Definition at line 198 of file cctwapplication.h.

Referenced by initialize(), readSettings(), settingsScript(), and writeSettings().

CctwTransformer* CctwApplication::m_Transformer

Definition at line 199 of file cctwapplication.h.

Referenced by CctwqtSetupOutputDialog::accept(), calculateChunkDependencies(), calculateDependencies(), CctwqtMainWindow::CctwqtMainWindow(), CctwqtSetupOutputDialog::CctwqtSetupOutputDialog(), Cctwtcl_Transform_Cmd(), dependencies(), CctwqtMainWindow::doBrowseProject(), CctwqtMainWindow::doCheckTransform(), CctwqtMainWindow::doProjectInput(), CctwqtMainWindow::doProjectOutput(), CctwqtMainWindow::doTransform(), initialize(), inputProject(), loadDependencies(), noDependencies(), outputProject(), readSettings(), runMerge(), runProject(), saveDependencies(), setCompression(), setNormalization(), setProjectOutput(), setSubset(), settingsScript(), transform(), and writeSettings().

CctwqtMainWindow* CctwApplication::m_Window

Definition at line 189 of file cctwapplication.h.

Referenced by initialize(), onProgress(), plotCurves(), printLine(), and printMessage().

QAtomicInt CctwApplication::m_WorkOutstanding

private

Definition at line 209 of file cctwapplication.h.

Referenced by addWorkOutstanding(), waitCompleted(), workCompleted(), and workOutstanding().

Property Documentation

QString CctwApplication::anglesFile

readwrite

Definition at line 231 of file cctwapplication.h.

int CctwApplication::debug

readwrite

Definition at line 237 of file cctwapplication.h.

QString CctwApplication::dependenciesPath

readwrite

Definition at line 249 of file cctwapplication.h.

int CctwApplication::exitStatus

readwrite

Definition at line 270 of file cctwapplication.h.

bool CctwApplication::guiWanted

readwrite

Definition at line 213 of file cctwapplication.h.

bool CctwApplication::halting

readwrite

Definition at line 240 of file cctwapplication.h.

QcepStringList CctwApplication::inputFiles

readwrite

Definition at line 222 of file cctwapplication.h.

Referenced by runMerge().

QString CctwApplication::maskFile

readwrite

Definition at line 228 of file cctwapplication.h.

int CctwApplication::mode

readwrite

Definition at line 216 of file cctwapplication.h.

int CctwApplication::mpiRank

readwrite

Definition at line 261 of file cctwapplication.h.

int CctwApplication::mpiSize

readwrite

Definition at line 264 of file cctwapplication.h.

QString CctwApplication::outputFile

readwrite

Definition at line 225 of file cctwapplication.h.

Referenced by runMerge().

int CctwApplication::progress

readwrite

Definition at line 243 of file cctwapplication.h.

int CctwApplication::progressLimit

readwrite

Definition at line 246 of file cctwapplication.h.

QString CctwApplication::scriptPath

readwrite

Definition at line 255 of file cctwapplication.h.

QString CctwApplication::settingsPath

readwrite

Definition at line 252 of file cctwapplication.h.

QString CctwApplication::specDataFilePath

readwrite

Definition at line 258 of file cctwapplication.h.

QcepStringList CctwApplication::startupCommands

readwrite

Definition at line 219 of file cctwapplication.h.

int CctwApplication::verbosity

readwrite

Definition at line 267 of file cctwapplication.h.

QString CctwApplication::weightsFile

readwrite

Definition at line 234 of file cctwapplication.h.

---

The documentation for this class was generated from the following files:

• /home/jennings/development/cctw/cctw-code/cctwlib/cctwapplication.h
• /home/jennings/development/cctw/cctw-code/cctwlib/cctwapplication.cpp